Discussing zebrafish genetic methods

This blog was originally set up to help plan a workshop held at the 2007 SCZI. During this workshop, it was clear that while there are some powerful new advances in genetic methods for the zebrafish, there are important questions about some existing methods, and several methods (notably homologous recombination and RNAi) which would be great for the field, but do not yet exist.

We've left this blog up as a forum in which people can discuss some of these methods. Below are several blog entries describing particular methods. Please add questions and comments under the appropriate heading.

--Chi-Bin Chien, Koichi Kawakami, Todd Evans, Hazel Sive

Monday, January 22, 2007

Conditional or tissue-specific expression

In flies, the Gal4/UAS system is invaluable for driving tissue-specific expression of transgenes. In mice, the Cre/Lox system and more recently, Cre/Lox combined with Tet on/off or regulatable Cre (e.g. CreER) has played a similar role.

Several labs are conducting Gal4-enhancer trap screens, including Koichi Kawakami's, Herwig Baier's, Marnie Halpern's, and Steve Johnson's. Papers describing pilot screens are in preparation, and most labs seem to be planning to post images of their insertions and make the lines available to the community.

There has recently been published work from several labs, including Tom Look's, on Cre/Lox. Laura Bally-Cuif's lab has had some success with CreERT.

It is not clear how well Cre works--for instance, does recombination recur in every single cell that expresses Cre?

1 comment:

Alex Schier said...

I would like to see strong evidence that GAL4 activates its target in all cells, not just in a variegated fashion (see Sagasti et al. Curr. Biology 2005).

I also would like to see strong evidence that Cre expressed from an integrated transgene efficiently induces recombination of an integrated transgene in all cells, not just in very few cells.